SDM93769.1 protein (Allokutzneria albata) - STRING interaction network

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Predicted Interactions

gene neighborhood

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Score

SDM93769.1

Hypothetical protein. (179 aa)

Predicted Functional Partners:

rplS

0.939

rpsB

0.936

rplB

0.936

rpsJ

0.936

rpmA

0.935

rpmJ

0.934

rnc

0.933

rpsO

0.932

rpsP

0.932

rplM

0.932

Your Current Organism:

Allokutzneria albata

NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM93769.1	rnc	SAMN04489726_4090	SAMN04489726_4176	Hypothetical protein.	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.933
SDM93769.1	rplB	SAMN04489726_4090	SAMN04489726_5147	Hypothetical protein.	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.936
SDM93769.1	rplM	SAMN04489726_4090	SAMN04489726_5109	Hypothetical protein.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.932
SDM93769.1	rplS	SAMN04489726_4090	SAMN04489726_4137	Hypothetical protein.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.939
SDM93769.1	rpmA	SAMN04489726_4090	SAMN04489726_7019	Hypothetical protein.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.935
SDM93769.1	rpmJ	SAMN04489726_4090	SAMN04489726_5125	Hypothetical protein.	LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.	0.934
SDM93769.1	rpsB	SAMN04489726_4090	SAMN04489726_4126	Hypothetical protein.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.936
SDM93769.1	rpsJ	SAMN04489726_4090	SAMN04489726_5151	Hypothetical protein.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.936
SDM93769.1	rpsO	SAMN04489726_4090	SAMN04489726_4024	Hypothetical protein.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.932
SDM93769.1	rpsP	SAMN04489726_4090	SAMN04489726_4141	Hypothetical protein.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.932
rnc	SDM93769.1	SAMN04489726_4176	SAMN04489726_4090	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Hypothetical protein.	0.933
rnc	rplB	SAMN04489726_4176	SAMN04489726_5147	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.961
rnc	rplM	SAMN04489726_4176	SAMN04489726_5109	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.975
rnc	rplS	SAMN04489726_4176	SAMN04489726_4137	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.973
rnc	rpmA	SAMN04489726_4176	SAMN04489726_7019	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.975
rnc	rpmJ	SAMN04489726_4176	SAMN04489726_5125	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.	0.962
rnc	rpsB	SAMN04489726_4176	SAMN04489726_4126	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.975
rnc	rpsJ	SAMN04489726_4176	SAMN04489726_5151	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.968
rnc	rpsO	SAMN04489726_4176	SAMN04489726_4024	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.982
rnc	rpsP	SAMN04489726_4176	SAMN04489726_4141	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.972