STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM97065.1Hypothetical protein. (221 aa)    
Predicted Functional Partners:
SDN26876.1
Helix-turn-helix domain-containing protein.
  
     0.771
SDN68927.1
Protein of unknown function.
  
     0.750
SDN13792.1
Type VII secretion protein EccE.
  
     0.731
SDN35243.1
SGNH hydrolase-like domain-containing protein, acetyltransferase AlgX.
  
     0.730
SDN13795.1
Hypothetical protein.
  
     0.725
SDN26895.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
     0.719
SDN41732.1
Hypothetical protein.
  
     0.709
ligA-2
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.694
SDM77730.1
RES domain-containing protein.
  
     0.691
SDM94794.1
Hypothetical protein.
  
     0.691
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.