STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN01393.1DNA-binding transcriptional regulator, AcrR family. (197 aa)    
Predicted Functional Partners:
SDN01373.1
ATPase components of ABC transporters with duplicated ATPase domains.
       0.762
SDN01350.1
Hypothetical protein.
       0.751
SDN49792.1
Transcriptional regulator, TetR family.
  
     0.639
SDN01410.1
Amidase.
       0.553
SDN01429.1
Hypothetical protein.
       0.553
SDN01452.1
Protein of unknown function.
       0.553
SDM15392.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.529
SDN01467.1
GrpB domain, predicted nucleotidyltransferase, UPF0157 family.
       0.488
SDN01491.1
Helix-turn-helix domain-containing protein.
       0.488
SDN01637.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
       0.482
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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