STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN01467.1GrpB domain, predicted nucleotidyltransferase, UPF0157 family. (187 aa)    
Predicted Functional Partners:
SDN01491.1
Helix-turn-helix domain-containing protein.
       0.773
SDN01637.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
       0.762
SDN01410.1
Amidase.
       0.675
SDN01429.1
Hypothetical protein.
       0.675
SDN01452.1
Protein of unknown function.
       0.675
SDN01653.1
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
       0.580
SDN01393.1
DNA-binding transcriptional regulator, AcrR family.
       0.488
SDN01373.1
ATPase components of ABC transporters with duplicated ATPase domains.
       0.482
SDN01350.1
Hypothetical protein.
       0.476
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.445
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.