SDN05760.1 protein (Allokutzneria albata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDN05760.1

MoxR-like ATPase. (396 aa)

Predicted Functional Partners:

SDN05780.1

0.763

SDN05514.1

0.728

SDN05530.1

0.728

SDN05435.1

0.720

SDN05967.1

0.709

SDN05589.1

0.693

SDN05862.1

0.688

SDM93214.1

0.684

SDM62778.1

0.679

SDN05745.1

0.678

Your Current Organism:

Allokutzneria albata

NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM62778.1	SDN05760.1	SAMN04489726_2587	SAMN04489726_4683	Arginine/lysine/ornithine decarboxylase.	MoxR-like ATPase.	0.679
SDM93214.1	SDN05760.1	SAMN04489726_4063	SAMN04489726_4683	Protoporphyrin IX magnesium-chelatase.	MoxR-like ATPase.	0.684
SDN05435.1	SDN05514.1	SAMN04489726_4667	SAMN04489726_4671	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	Uncharacterized membrane protein.	0.774
SDN05435.1	SDN05530.1	SAMN04489726_4667	SAMN04489726_4672	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	PrgI family protein.	0.758
SDN05435.1	SDN05589.1	SAMN04489726_4667	SAMN04489726_4675	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	AAA-like domain-containing protein.	0.728
SDN05435.1	SDN05760.1	SAMN04489726_4667	SAMN04489726_4683	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	MoxR-like ATPase.	0.720
SDN05435.1	SDN05780.1	SAMN04489726_4667	SAMN04489726_4684	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	LysM domain-containing protein.	0.717
SDN05435.1	SDN05967.1	SAMN04489726_4667	SAMN04489726_4693	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	Hypothetical protein.	0.517
SDN05514.1	SDN05435.1	SAMN04489726_4671	SAMN04489726_4667	Uncharacterized membrane protein.	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	0.774
SDN05514.1	SDN05530.1	SAMN04489726_4671	SAMN04489726_4672	Uncharacterized membrane protein.	PrgI family protein.	0.957
SDN05514.1	SDN05589.1	SAMN04489726_4671	SAMN04489726_4675	Uncharacterized membrane protein.	AAA-like domain-containing protein.	0.827
SDN05514.1	SDN05760.1	SAMN04489726_4671	SAMN04489726_4683	Uncharacterized membrane protein.	MoxR-like ATPase.	0.728
SDN05514.1	SDN05780.1	SAMN04489726_4671	SAMN04489726_4684	Uncharacterized membrane protein.	LysM domain-containing protein.	0.765
SDN05514.1	SDN05862.1	SAMN04489726_4671	SAMN04489726_4688	Uncharacterized membrane protein.	TadE-like protein.	0.557
SDN05514.1	SDN05967.1	SAMN04489726_4671	SAMN04489726_4693	Uncharacterized membrane protein.	Hypothetical protein.	0.696
SDN05530.1	SDN05435.1	SAMN04489726_4672	SAMN04489726_4667	PrgI family protein.	DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.	0.758
SDN05530.1	SDN05514.1	SAMN04489726_4672	SAMN04489726_4671	PrgI family protein.	Uncharacterized membrane protein.	0.957
SDN05530.1	SDN05589.1	SAMN04489726_4672	SAMN04489726_4675	PrgI family protein.	AAA-like domain-containing protein.	0.831
SDN05530.1	SDN05760.1	SAMN04489726_4672	SAMN04489726_4683	PrgI family protein.	MoxR-like ATPase.	0.728
SDN05530.1	SDN05780.1	SAMN04489726_4672	SAMN04489726_4684	PrgI family protein.	LysM domain-containing protein.	0.777