STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN05942.1Pilus assembly protein, ATPase of CpaF family. (458 aa)    
Predicted Functional Partners:
SDN05905.1
Type II secretion system (T2SS), protein F.
 
  
 0.940
SDN05924.1
Flp pilus assembly protein TadB.
 
  
 0.930
SDN05967.1
Hypothetical protein.
 
    0.871
SDN05862.1
TadE-like protein.
 
    0.854
SDN05848.1
TadE-like protein.
 
    0.809
SDN05983.1
SAF domain-containing protein.
  
    0.799
SDN05828.1
Hypothetical protein.
 
     0.667
SDN05999.1
Hypothetical protein.
 
     0.661
SDN05885.1
Hypothetical protein.
       0.651
SDN05780.1
LysM domain-containing protein.
 
     0.636
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.