Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM34481.1 | SDN06447.1 | SAMN04489726_1152 | SAMN04489726_4720 | PAS domain S-box-containing protein. | Leader peptidase (prepilin peptidase) / N-methyltransferase. | 0.463 |
SDM34481.1 | SDN53111.1 | SAMN04489726_1152 | SAMN04489726_7035 | PAS domain S-box-containing protein. | Competence protein ComEC. | 0.494 |
SDM34481.1 | SDN67157.1 | SAMN04489726_1152 | SAMN04489726_7687 | PAS domain S-box-containing protein. | Signal transduction histidine kinase. | 0.999 |
SDM85734.1 | SDN06447.1 | SAMN04489726_3700 | SAMN04489726_4720 | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | Leader peptidase (prepilin peptidase) / N-methyltransferase. | 0.478 |
SDM94564.1 | SDN06447.1 | SAMN04489726_4130 | SAMN04489726_4720 | DNA processing protein. | Leader peptidase (prepilin peptidase) / N-methyltransferase. | 0.559 |
SDM94564.1 | SDN53099.1 | SAMN04489726_4130 | SAMN04489726_7034 | DNA processing protein. | Competence protein ComEA. | 0.455 |
SDM94564.1 | SDN53111.1 | SAMN04489726_4130 | SAMN04489726_7035 | DNA processing protein. | Competence protein ComEC. | 0.854 |
SDN06447.1 | SDM34481.1 | SAMN04489726_4720 | SAMN04489726_1152 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | PAS domain S-box-containing protein. | 0.463 |
SDN06447.1 | SDM85734.1 | SAMN04489726_4720 | SAMN04489726_3700 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.478 |
SDN06447.1 | SDM94564.1 | SAMN04489726_4720 | SAMN04489726_4130 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | DNA processing protein. | 0.559 |
SDN06447.1 | SDN06465.1 | SAMN04489726_4720 | SAMN04489726_4721 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | DNA-binding transcriptional regulator, HxlR family. | 0.773 |
SDN06447.1 | SDN23728.1 | SAMN04489726_4720 | SAMN04489726_5660 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | DNA processing protein. | 0.559 |
SDN06447.1 | SDN53099.1 | SAMN04489726_4720 | SAMN04489726_7034 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | Competence protein ComEA. | 0.604 |
SDN06447.1 | SDN53111.1 | SAMN04489726_4720 | SAMN04489726_7035 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | Competence protein ComEC. | 0.751 |
SDN06447.1 | SDN67157.1 | SAMN04489726_4720 | SAMN04489726_7687 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | Signal transduction histidine kinase. | 0.553 |
SDN06447.1 | SDN70321.1 | SAMN04489726_4720 | SAMN04489726_7846 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.629 |
SDN06447.1 | coaE | SAMN04489726_4720 | SAMN04489726_3344 | Leader peptidase (prepilin peptidase) / N-methyltransferase. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.540 |
SDN06465.1 | SDN06447.1 | SAMN04489726_4721 | SAMN04489726_4720 | DNA-binding transcriptional regulator, HxlR family. | Leader peptidase (prepilin peptidase) / N-methyltransferase. | 0.773 |
SDN23728.1 | SDN06447.1 | SAMN04489726_5660 | SAMN04489726_4720 | DNA processing protein. | Leader peptidase (prepilin peptidase) / N-methyltransferase. | 0.559 |
SDN23728.1 | SDN53111.1 | SAMN04489726_5660 | SAMN04489726_7035 | DNA processing protein. | Competence protein ComEC. | 0.858 |
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