STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN12168.1Transcriptional regulator PadR-like family protein. (188 aa)    
Predicted Functional Partners:
SDN12208.1
ABC-2 type transport system permease protein.
 
     0.683
SDN12193.1
ABC-2 type transport system ATP-binding protein.
 
    0.653
SDN12132.1
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains.
 
     0.611
SDN12144.1
TatD DNase family protein.
       0.559
SDN12230.1
Para-aminobenzoate synthetase component 1.
       0.524
SDN20829.1
LPXTG-motif cell wall anchor domain-containing protein.
  
     0.401
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.