STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN12406.1DNA-binding transcriptional regulator YbjK. (193 aa)    
Predicted Functional Partners:
SDN12421.1
Dihydrofolate reductase.
 
     0.768
SDN12383.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
       0.705
SDN12368.1
Predicted arabinose efflux permease, MFS family.
       0.641
SDM31472.1
Tetratricopeptide repeat-containing protein.
  
    0.573
SDN02449.1
MarR family protein.
  
    0.559
SDM49686.1
Dihydrofolate reductase.
 
     0.512
SDN12350.1
Transporter family-2 protein.
       0.510
SDN12303.1
Protein of unknown function.
       0.509
folD-2
Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.509
SDN37893.1
DNA-binding transcriptional activator of the SARP family.
  
    0.494
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.