STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN16196.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SDN16326.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.898
SDN08232.1
Hypothetical protein.
  
    0.807
SDN16227.1
Hypothetical protein.
       0.791
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
    0.785
SDN16217.1
Hypothetical protein.
       0.780
SDN16184.1
Hypothetical protein.
       0.768
SDM43232.1
Hypothetical protein.
  
     0.766
SDN38573.1
Protein of unknown function.
  
     0.765
SDN16151.1
Two-component system, OmpR family, sensor kinase.
       0.752
SDN16165.1
Two-component system, OmpR family, response regulator.
       0.752
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.