STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN22861.1Sugar phosphate isomerase/epimerase. (255 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
    
  0.780
SDN70321.1
Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family.
    
  0.778
SDN19224.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
  
 
 0.703
SDM39774.1
Shikimate 5-dehydrogenase.
    
  0.684
SDN19236.1
5-deoxy-glucuronate isomerase.
 
  
 0.617
SDN22838.1
Transcriptional regulator, LacI family.
  
    0.612
SDN36472.1
L-rhamnose mutarotase.
 
    0.577
SDM74803.1
Predicted dehydrogenase.
  
 
  0.558
xylB
Xylulokinase.
   
 
  0.540
SDM74673.1
Tetratricopeptide repeat-containing protein.
  
     0.478
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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