SDN30528.1 protein (Allokutzneria albata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SDN30528.1

ABC-2 type transport system ATP-binding protein. (263 aa)

Predicted Functional Partners:

SDN30555.1

0.999

SDM86729.1

0.977

SDN03599.1

0.977

SDN51254.1

0.977

SDN30495.1

0.961

SDN44734.1

0.810

SDM30114.1

0.790

SDM55678.1

0.790

SDN56744.1

0.721

SDN27495.1

0.695

Your Current Organism:

Allokutzneria albata

NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM30114.1	SDM86729.1	SAMN04489726_0871	SAMN04489726_3751	Hypothetical protein; Manually curated.	Oleandomycin transport system permease protein.	0.543
SDM30114.1	SDN03599.1	SAMN04489726_0871	SAMN04489726_4576	Hypothetical protein; Manually curated.	ABC-2 type transport system permease protein.	0.543
SDM30114.1	SDN27495.1	SAMN04489726_0871	SAMN04489726_5833	Hypothetical protein; Manually curated.	Glycosyltransferase, GT2 family.	0.505
SDM30114.1	SDN30528.1	SAMN04489726_0871	SAMN04489726_5967	Hypothetical protein; Manually curated.	ABC-2 type transport system ATP-binding protein.	0.790
SDM30114.1	SDN30555.1	SAMN04489726_0871	SAMN04489726_5968	Hypothetical protein; Manually curated.	ABC-2 type transport system permease protein.	0.543
SDM30114.1	SDN51254.1	SAMN04489726_0871	SAMN04489726_6945	Hypothetical protein; Manually curated.	ABC-2 type transport system permease protein.	0.543
SDM30114.1	SDN56744.1	SAMN04489726_0871	SAMN04489726_7204	Hypothetical protein; Manually curated.	Polymer biosynthesis protein, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.	0.932
SDM55678.1	SDM86729.1	SAMN04489726_2226	SAMN04489726_3751	Hypothetical protein.	Oleandomycin transport system permease protein.	0.543
SDM55678.1	SDN03599.1	SAMN04489726_2226	SAMN04489726_4576	Hypothetical protein.	ABC-2 type transport system permease protein.	0.543
SDM55678.1	SDN27495.1	SAMN04489726_2226	SAMN04489726_5833	Hypothetical protein.	Glycosyltransferase, GT2 family.	0.505
SDM55678.1	SDN30528.1	SAMN04489726_2226	SAMN04489726_5967	Hypothetical protein.	ABC-2 type transport system ATP-binding protein.	0.790
SDM55678.1	SDN30555.1	SAMN04489726_2226	SAMN04489726_5968	Hypothetical protein.	ABC-2 type transport system permease protein.	0.543
SDM55678.1	SDN51254.1	SAMN04489726_2226	SAMN04489726_6945	Hypothetical protein.	ABC-2 type transport system permease protein.	0.543
SDM55678.1	SDN56744.1	SAMN04489726_2226	SAMN04489726_7204	Hypothetical protein.	Polymer biosynthesis protein, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.	0.932
SDM86729.1	SDM30114.1	SAMN04489726_3751	SAMN04489726_0871	Oleandomycin transport system permease protein.	Hypothetical protein; Manually curated.	0.543
SDM86729.1	SDM55678.1	SAMN04489726_3751	SAMN04489726_2226	Oleandomycin transport system permease protein.	Hypothetical protein.	0.543
SDM86729.1	SDN03599.1	SAMN04489726_3751	SAMN04489726_4576	Oleandomycin transport system permease protein.	ABC-2 type transport system permease protein.	0.515
SDM86729.1	SDN27495.1	SAMN04489726_3751	SAMN04489726_5833	Oleandomycin transport system permease protein.	Glycosyltransferase, GT2 family.	0.553
SDM86729.1	SDN30528.1	SAMN04489726_3751	SAMN04489726_5967	Oleandomycin transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.977
SDM86729.1	SDN51254.1	SAMN04489726_3751	SAMN04489726_6945	Oleandomycin transport system permease protein.	ABC-2 type transport system permease protein.	0.515

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Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.966

expected number of edges:

33

PPI enrichment p-value:

0.24

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

8 of 104

1.18

1.4

2.81e-06

GO:0019538

Protein metabolic process

10 of 228

0.93

1.0

2.09e-06

GO:0044271

Cellular nitrogen compound biosynthetic process

9 of 254

0.84

0.81

2.41e-05

GO:1901566

Organonitrogen compound biosynthetic process

9 of 276

0.8

0.75

4.42e-05

GO:1901564

Organonitrogen compound metabolic process

11 of 473

0.66

0.61

8.82e-06

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 53

1.41

1.88

1.33e-06

GO:0019843

rRNA binding

4 of 41

1.28

0.86

0.0080

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 55

1.4

1.96

3.12e-07

GO:0044391

Ribosomal subunit

2 of 15

1.42

0.64

0.0470

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:106

Structural constituent of ribosome

7 of 54

1.4

2.01

1.74e-07

CL:103

Structural constituent of ribosome, and Elongation factor

8 of 68

1.36

1.99

5.59e-08

CL:85

Mixed, incl. Translation, and Oxidative phosphorylation

10 of 168

1.07

1.33

5.27e-08

CL:146

Ribosomal protein

3 of 17

1.54

1.13

0.0031

CL:108

Structural constituent of ribosome

4 of 42

1.27

1.05

0.0016

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

7 of 54

1.4

1.97

3.20e-07

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 42

1.51

2.28

1.22e-07

GOCC:0044391

Ribosomal subunit

5 of 22

1.65

2.05

9.09e-06

GOCC:0022626

Cytosolic ribosome

4 of 16

1.69

1.85

5.67e-05

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 10

1.77

1.5

0.00070

GOCC:0015934

Large ribosomal subunit

2 of 10

1.59

0.77

0.0277

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 53

1.41

1.96

4.58e-07

KW-0699

rRNA-binding

4 of 39

1.3

1.03

0.0023

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