STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN31345.1Carboxymethylenebutenolidase. (234 aa)    
Predicted Functional Partners:
SDM58716.1
Carboxymethylenebutenolidase.
  
  
 
0.910
SDM63899.1
Maleylacetate reductase.
   
 
 0.892
SDM39649.1
Protocatechuate 3,4-dioxygenase beta subunit.
   
 
  0.872
SDM92002.1
Protocatechuate 3,4-dioxygenase beta subunit.
  
 
  0.752
SDM52959.1
Amino acid adenylation domain-containing protein.
  
 
  0.638
SDN31364.1
acetoacetyl-CoA synthetase.
  
    0.630
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.597
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.473
SDN38859.1
Aldose 1-epimerase.
  
  
  0.462
SDN31393.1
Hypothetical protein.
       0.460
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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