STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN33375.1Helicase/secretion neighborhood CpaE-like protein. (356 aa)    
Predicted Functional Partners:
SDN33409.1
Tight adherence protein B.
 
     0.900
SDN33393.1
Pilus assembly protein CpaF.
 
     0.825
SDM51769.1
ParB-like nuclease domain-containing protein.
  
 
 0.716
SDN25899.1
Chromosome segregation DNA-binding protein; Belongs to the ParB family.
  
 
 0.716
SDN40486.1
Flp pilus assembly protein CpaB.
 
   
 0.693
SDN33436.1
Type II secretion system (T2SS), protein F.
 
     0.690
SDN25679.1
Hypothetical protein.
  
     0.574
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.557
SDN33470.1
TadE-like protein.
       0.506
SDN33357.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
     
 0.503
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.