SDN35091.1 protein (Allokutzneria albata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDN35091.1

Metabolite-proton symporter. (440 aa)

Predicted Functional Partners:

SDN35119.1

0.773

cysS

0.661

SDN35174.1

0.661

SDN35072.1

0.482

SDN35194.1

0.466

Your Current Organism:

Allokutzneria albata

NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDN35072.1	SDN35091.1	SAMN04489726_6187	SAMN04489726_6188	Hypothetical protein.	Metabolite-proton symporter.	0.482
SDN35072.1	SDN35119.1	SAMN04489726_6187	SAMN04489726_6189	Hypothetical protein.	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	0.482
SDN35072.1	SDN35174.1	SAMN04489726_6187	SAMN04489726_6191	Hypothetical protein.	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.421
SDN35072.1	cysS	SAMN04489726_6187	SAMN04489726_6190	Hypothetical protein.	cysteinyl-tRNA synthetase; Manually curated; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.421
SDN35091.1	SDN35072.1	SAMN04489726_6188	SAMN04489726_6187	Metabolite-proton symporter.	Hypothetical protein.	0.482
SDN35091.1	SDN35119.1	SAMN04489726_6188	SAMN04489726_6189	Metabolite-proton symporter.	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	0.773
SDN35091.1	SDN35174.1	SAMN04489726_6188	SAMN04489726_6191	Metabolite-proton symporter.	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.661
SDN35091.1	SDN35194.1	SAMN04489726_6188	SAMN04489726_6192	Metabolite-proton symporter.	Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.	0.466
SDN35091.1	cysS	SAMN04489726_6188	SAMN04489726_6190	Metabolite-proton symporter.	cysteinyl-tRNA synthetase; Manually curated; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.661
SDN35119.1	SDN35072.1	SAMN04489726_6189	SAMN04489726_6187	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	Hypothetical protein.	0.482
SDN35119.1	SDN35091.1	SAMN04489726_6189	SAMN04489726_6188	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	Metabolite-proton symporter.	0.773
SDN35119.1	SDN35174.1	SAMN04489726_6189	SAMN04489726_6191	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.710
SDN35119.1	SDN35194.1	SAMN04489726_6189	SAMN04489726_6192	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.	0.476
SDN35119.1	cysS	SAMN04489726_6189	SAMN04489726_6190	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	cysteinyl-tRNA synthetase; Manually curated; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.711
SDN35174.1	SDN35072.1	SAMN04489726_6191	SAMN04489726_6187	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Hypothetical protein.	0.421
SDN35174.1	SDN35091.1	SAMN04489726_6191	SAMN04489726_6188	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Metabolite-proton symporter.	0.661
SDN35174.1	SDN35119.1	SAMN04489726_6191	SAMN04489726_6189	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Uncharacterized protein; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase/haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.	0.710
SDN35174.1	SDN35194.1	SAMN04489726_6191	SAMN04489726_6192	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.	0.576
SDN35174.1	cysS	SAMN04489726_6191	SAMN04489726_6190	23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	cysteinyl-tRNA synthetase; Manually curated; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.946
SDN35194.1	SDN35091.1	SAMN04489726_6192	SAMN04489726_6188	Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.	Metabolite-proton symporter.	0.466