STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN41074.1ABC-2 type transport system ATP-binding protein. (300 aa)    
Predicted Functional Partners:
SDN41048.1
ABC-2 type transport system permease protein.
 
 
  0.953
SDN41033.1
Signal transduction histidine kinase.
 
    0.850
SDN41010.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
     0.813
SDN48193.1
ABC-2 type transport system permease protein.
  
 
  0.805
SDM86886.1
Oleandomycin transport system permease protein.
 
 0.675
SDN52590.1
Lipooligosaccharide transport system permease protein.
  
 
  0.657
SDN52609.1
Lipooligosaccharide transport system permease protein.
  
 
  0.627
SDM74941.1
ABC transporter efflux protein, DrrB family.
 
 0.570
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.533
SDN41101.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.529
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.