SDN46023.1 protein (Allokutzneria albata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDN46023.1

ATP-binding cassette, subfamily B; Manually curated. (1240 aa)

Predicted Functional Partners:

SDM39281.1

0.902

SDN46070.1

0.741

SDN03352.1

0.729

SDM32612.1

0.727

SDN46052.1

0.725

SDM52959.1

0.697

SDM29007.1

0.693

SDN29003.1

0.668

SDN09002.1

0.627

SDM98614.1

0.590

Your Current Organism:

Allokutzneria albata

NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM29007.1	SDM52959.1	SAMN04489726_0814	SAMN04489726_2079	Phosphopantetheine attachment site.	Amino acid adenylation domain-containing protein.	0.999
SDM29007.1	SDN03352.1	SAMN04489726_0814	SAMN04489726_4562	Phosphopantetheine attachment site.	Acyl transferase domain-containing protein.	0.998
SDM29007.1	SDN46023.1	SAMN04489726_0814	SAMN04489726_6710	Phosphopantetheine attachment site.	ATP-binding cassette, subfamily B; Manually curated.	0.693
SDM32612.1	SDM52959.1	SAMN04489726_1028	SAMN04489726_2079	ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain; Manually curated.	Amino acid adenylation domain-containing protein.	0.421
SDM32612.1	SDN46023.1	SAMN04489726_1028	SAMN04489726_6710	ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain; Manually curated.	ATP-binding cassette, subfamily B; Manually curated.	0.727
SDM39281.1	SDN29003.1	SAMN04489726_1398	SAMN04489726_5901	ATP-binding cassette, subfamily B, IrtB.	ATP-binding cassette, subfamily C, CydCD.	0.902
SDM39281.1	SDN46023.1	SAMN04489726_1398	SAMN04489726_6710	ATP-binding cassette, subfamily B, IrtB.	ATP-binding cassette, subfamily B; Manually curated.	0.902
SDM52959.1	SDM29007.1	SAMN04489726_2079	SAMN04489726_0814	Amino acid adenylation domain-containing protein.	Phosphopantetheine attachment site.	0.999
SDM52959.1	SDM32612.1	SAMN04489726_2079	SAMN04489726_1028	Amino acid adenylation domain-containing protein.	ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain; Manually curated.	0.421
SDM52959.1	SDN03352.1	SAMN04489726_2079	SAMN04489726_4562	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDM52959.1	SDN46023.1	SAMN04489726_2079	SAMN04489726_6710	Amino acid adenylation domain-containing protein.	ATP-binding cassette, subfamily B; Manually curated.	0.697
SDM98614.1	SDN09002.1	SAMN04489726_4330	SAMN04489726_4856	Hypothetical protein.	Hypothetical protein.	0.735
SDM98614.1	SDN46023.1	SAMN04489726_4330	SAMN04489726_6710	Hypothetical protein.	ATP-binding cassette, subfamily B; Manually curated.	0.590
SDN03352.1	SDM29007.1	SAMN04489726_4562	SAMN04489726_0814	Acyl transferase domain-containing protein.	Phosphopantetheine attachment site.	0.998
SDN03352.1	SDM52959.1	SAMN04489726_4562	SAMN04489726_2079	Acyl transferase domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDN03352.1	SDN46023.1	SAMN04489726_4562	SAMN04489726_6710	Acyl transferase domain-containing protein.	ATP-binding cassette, subfamily B; Manually curated.	0.729
SDN09002.1	SDM98614.1	SAMN04489726_4856	SAMN04489726_4330	Hypothetical protein.	Hypothetical protein.	0.735
SDN09002.1	SDN29003.1	SAMN04489726_4856	SAMN04489726_5901	Hypothetical protein.	ATP-binding cassette, subfamily C, CydCD.	0.628
SDN09002.1	SDN46023.1	SAMN04489726_4856	SAMN04489726_6710	Hypothetical protein.	ATP-binding cassette, subfamily B; Manually curated.	0.627
SDN29003.1	SDM39281.1	SAMN04489726_5901	SAMN04489726_1398	ATP-binding cassette, subfamily C, CydCD.	ATP-binding cassette, subfamily B, IrtB.	0.902