STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN47846.1Protein N-acetyltransferase, RimJ/RimL family. (220 aa)    
Predicted Functional Partners:
SDN47826.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.774
SDN47804.1
Transcriptional regulator, GntR family.
       0.773
SDM88819.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
  0.683
SDN47771.1
Hypothetical protein.
       0.639
SDN47908.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
   
   0.541
SDN47866.1
Signal transduction histidine kinase.
       0.505
SDN40888.1
ABC-2 type transport system permease protein.
  
     0.501
SDM29768.1
Hypothetical protein.
  
     0.462
SDM98974.1
Phosphotransferase enzyme family protein.
  
 
   0.456
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.416
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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