STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN55411.1Transcriptional regulator, contains XRE-family HTH domain; Manually curated. (412 aa)    
Predicted Functional Partners:
SDN55389.1
Flavoprotein.
 
    0.902
SDN55438.1
DUF218 domain-containing protein.
 
     0.786
SDM53436.1
Hypothetical protein.
  
     0.657
SDN59129.1
Helix-turn-helix domain-containing protein.
  
     0.588
SDN66318.1
Hypothetical protein.
  
     0.568
SDN39808.1
DUF218 domain-containing protein.
  
     0.536
SDM69768.1
Biotin carboxylase.
  
     0.534
SDN55371.1
Hypothetical protein.
       0.511
SDN55321.1
Hypothetical protein.
       0.505
SDN55346.1
Hypothetical protein.
       0.505
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.