STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN56852.1Cytochrome c biogenesis protein CcdA. (272 aa)    
Predicted Functional Partners:
SDN56830.1
Protein-disulfide isomerase.
 
   
 0.942
SDN16022.1
Cytochrome c-type biogenesis protein CcsB.
  
  
 0.878
SDN16041.1
Cytochrome c biogenesis protein.
  
  
 0.863
SDN16060.1
Cytochrome c-type biogenesis protein.
  
     0.572
SDN16326.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.544
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
 0.507
SDN33050.1
Thiol-disulfide isomerase or thioredoxin.
 
  
 0.493
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.487
SDM15229.1
Protein of unknown function.
   
    0.485
SDM73108.1
Zinc transporter, ZIP family.
   
    0.485
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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