Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM28322.1 | SDN57080.1 | SAMN04489726_0778 | SAMN04489726_7219 | GAF domain-containing protein. | Conserved TM helix. | 0.408 |
SDM99012.1 | SDN57080.1 | SAMN04489726_4350 | SAMN04489726_7219 | Putative regulatory protein, FmdB family; Manually curated. | Conserved TM helix. | 0.489 |
SDN57061.1 | SDN57080.1 | SAMN04489726_7218 | SAMN04489726_7219 | DNA-binding transcriptional regulator, PucR family. | Conserved TM helix. | 0.451 |
SDN57080.1 | SDM28322.1 | SAMN04489726_7219 | SAMN04489726_0778 | Conserved TM helix. | GAF domain-containing protein. | 0.408 |
SDN57080.1 | SDM99012.1 | SAMN04489726_7219 | SAMN04489726_4350 | Conserved TM helix. | Putative regulatory protein, FmdB family; Manually curated. | 0.489 |
SDN57080.1 | SDN57061.1 | SAMN04489726_7219 | SAMN04489726_7218 | Conserved TM helix. | DNA-binding transcriptional regulator, PucR family. | 0.451 |
SDN57080.1 | gcvP | SAMN04489726_7219 | SAMN04489726_2987 | Conserved TM helix. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.549 |
gcvP | SDN57080.1 | SAMN04489726_2987 | SAMN04489726_7219 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Conserved TM helix. | 0.549 |