STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN59129.1Helix-turn-helix domain-containing protein. (160 aa)    
Predicted Functional Partners:
SDN59144.1
Beta-lactamase enzyme family protein.
       0.819
SDN59098.1
Transglutaminase-like superfamily protein.
       0.723
lipB
Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.591
SDN59189.1
Undecaprenyl-diphosphatase.
       0.590
SDN59209.1
Hypothetical protein.
       0.590
SDN55411.1
Transcriptional regulator, contains XRE-family HTH domain; Manually curated.
  
     0.588
SDN31237.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
    0.550
SDM94865.1
AAA domain-containing protein.
  
     0.490
SDM51665.1
Hypothetical protein.
  
    0.470
SDM19592.1
DinB superfamily protein.
  
     0.467
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.