STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN63128.1tRNA-splicing ligase RtcB. (397 aa)    
Predicted Functional Partners:
SDN63899.1
Hypothetical protein.
  
    0.759
SDN63146.1
NADP-dependent aldehyde dehydrogenase.
       0.642
SDN63167.1
NAD dependent epimerase/dehydratase family protein.
       0.642
SDN63192.1
DNA-binding transcriptional regulator, IclR family.
       0.617
SDM18925.1
Hypothetical protein.
  
    0.515
SDN63881.1
Hypothetical protein.
  
    0.515
kptA
Putative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.458
SDM93028.1
Superfamily II DNA and RNA helicase.
   
 0.457
SDN08212.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 0.457
SDM58529.1
AAA domain (dynein-related subfamily).
  
     0.445
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.