Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000317285_00084 | GCA_000317285_02537 | GCA_000317285_00084 | GCA_000317285_02537 | Unannotated protein. | Unannotated protein. | 0.966 |
GCA_000317285_00084 | cofG | GCA_000317285_00084 | GCA_000317285_03280 | Unannotated protein. | Unannotated protein; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil. | 0.426 |
GCA_000317285_00084 | cofH | GCA_000317285_00084 | GCA_000317285_05190 | Unannotated protein. | Unannotated protein; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine. | 0.426 |
GCA_000317285_00084 | thiC | GCA_000317285_00084 | GCA_000317285_01488 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.780 |
GCA_000317285_00084 | thiE | GCA_000317285_00084 | GCA_000317285_05024 | Unannotated protein. | Unannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.576 |
GCA_000317285_00084 | thiG | GCA_000317285_00084 | GCA_000317285_02536 | Unannotated protein. | Unannotated protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.966 |
GCA_000317285_00084 | ycf40 | GCA_000317285_00084 | GCA_000317285_05023 | Unannotated protein. | Unannotated protein. | 0.980 |
GCA_000317285_02537 | GCA_000317285_00084 | GCA_000317285_02537 | GCA_000317285_00084 | Unannotated protein. | Unannotated protein. | 0.966 |
GCA_000317285_02537 | PCC6912_22560 | GCA_000317285_02537 | GCA_000317285_04800 | Unannotated protein. | Unannotated protein. | 0.971 |
GCA_000317285_02537 | PCC6912_54460 | GCA_000317285_02537 | GCA_000317285_06170 | Unannotated protein. | Unannotated protein. | 0.966 |
GCA_000317285_02537 | cofG | GCA_000317285_02537 | GCA_000317285_03280 | Unannotated protein. | Unannotated protein; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil. | 0.976 |
GCA_000317285_02537 | cofH | GCA_000317285_02537 | GCA_000317285_05190 | Unannotated protein. | Unannotated protein; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine. | 0.976 |
GCA_000317285_02537 | moeB | GCA_000317285_02537 | GCA_000317285_02160 | Unannotated protein. | Unannotated protein. | 0.980 |
GCA_000317285_02537 | thiC | GCA_000317285_02537 | GCA_000317285_01488 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.909 |
GCA_000317285_02537 | thiE | GCA_000317285_02537 | GCA_000317285_05024 | Unannotated protein. | Unannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.964 |
GCA_000317285_02537 | thiG | GCA_000317285_02537 | GCA_000317285_02536 | Unannotated protein. | Unannotated protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
GCA_000317285_02537 | ycf40 | GCA_000317285_02537 | GCA_000317285_05023 | Unannotated protein. | Unannotated protein. | 0.999 |
PCC6912_22560 | GCA_000317285_02537 | GCA_000317285_04800 | GCA_000317285_02537 | Unannotated protein. | Unannotated protein. | 0.971 |
PCC6912_22560 | moeB | GCA_000317285_04800 | GCA_000317285_02160 | Unannotated protein. | Unannotated protein. | 0.556 |
PCC6912_22560 | thiC | GCA_000317285_04800 | GCA_000317285_01488 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.865 |
page 1 of 5