Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PCC6912_10020 | PCC6912_10600 | GCA_000317285_03038 | GCA_000317285_03098 | Unannotated protein. | Unannotated protein. | 0.524 |
PCC6912_10020 | cbiD | GCA_000317285_03038 | GCA_000317285_06277 | Unannotated protein. | Unannotated protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. | 0.685 |
PCC6912_10020 | cobB | GCA_000317285_03038 | GCA_000317285_02683 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.895 |
PCC6912_10020 | cobH | GCA_000317285_03038 | GCA_000317285_06276 | Unannotated protein. | Unannotated protein. | 0.744 |
PCC6912_10020 | cobI | GCA_000317285_03038 | GCA_000317285_05302 | Unannotated protein. | Unannotated protein; Belongs to the precorrin methyltransferase family. | 0.506 |
PCC6912_10020 | cobJ | GCA_000317285_03038 | GCA_000317285_05204 | Unannotated protein. | Unannotated protein. | 0.691 |
PCC6912_10020 | cobM | GCA_000317285_03038 | GCA_000317285_01093 | Unannotated protein. | Unannotated protein; Belongs to the precorrin methyltransferase family. | 0.736 |
PCC6912_10020 | cobO | GCA_000317285_03038 | GCA_000317285_05660 | Unannotated protein. | Unannotated protein. | 0.433 |
PCC6912_10020 | cobQ | GCA_000317285_03038 | GCA_000317285_03329 | Unannotated protein. | Unannotated protein; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.981 |
PCC6912_10020 | cobU | GCA_000317285_03038 | GCA_000317285_01683 | Unannotated protein. | Unannotated protein. | 0.790 |
PCC6912_10600 | PCC6912_10020 | GCA_000317285_03098 | GCA_000317285_03038 | Unannotated protein. | Unannotated protein. | 0.524 |
PCC6912_10600 | cbiD | GCA_000317285_03098 | GCA_000317285_06277 | Unannotated protein. | Unannotated protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. | 0.993 |
PCC6912_10600 | cobB | GCA_000317285_03098 | GCA_000317285_02683 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.866 |
PCC6912_10600 | cobH | GCA_000317285_03098 | GCA_000317285_06276 | Unannotated protein. | Unannotated protein. | 0.983 |
PCC6912_10600 | cobI | GCA_000317285_03098 | GCA_000317285_05302 | Unannotated protein. | Unannotated protein; Belongs to the precorrin methyltransferase family. | 0.991 |
PCC6912_10600 | cobJ | GCA_000317285_03098 | GCA_000317285_05204 | Unannotated protein. | Unannotated protein. | 0.999 |
PCC6912_10600 | cobM | GCA_000317285_03098 | GCA_000317285_01093 | Unannotated protein. | Unannotated protein; Belongs to the precorrin methyltransferase family. | 0.991 |
PCC6912_10600 | cobO | GCA_000317285_03098 | GCA_000317285_05660 | Unannotated protein. | Unannotated protein. | 0.454 |
PCC6912_10600 | cobQ | GCA_000317285_03098 | GCA_000317285_03329 | Unannotated protein. | Unannotated protein; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.971 |
PCC6912_10600 | cobU | GCA_000317285_03098 | GCA_000317285_01683 | Unannotated protein. | Unannotated protein. | 0.760 |
page 1 of 6