Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000317285_00281 | GCA_000317285_02162 | GCA_000317285_00281 | GCA_000317285_02162 | Unannotated protein. | Unannotated protein. | 0.975 |
GCA_000317285_00281 | PCC6912_14770 | GCA_000317285_00281 | GCA_000317285_03931 | Unannotated protein. | Unannotated protein. | 0.655 |
GCA_000317285_00281 | PCC6912_40690 | GCA_000317285_00281 | GCA_000317285_00884 | Unannotated protein. | Unannotated protein. | 0.975 |
GCA_000317285_00281 | psbD1 | GCA_000317285_00281 | GCA_000317285_00861 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. | 0.979 |
GCA_000317285_02162 | GCA_000317285_00281 | GCA_000317285_02162 | GCA_000317285_00281 | Unannotated protein. | Unannotated protein. | 0.975 |
GCA_000317285_02162 | PCC6912_14770 | GCA_000317285_02162 | GCA_000317285_03931 | Unannotated protein. | Unannotated protein. | 0.655 |
GCA_000317285_02162 | psbD1 | GCA_000317285_02162 | GCA_000317285_00861 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. | 0.994 |
PCC6912_14770 | GCA_000317285_00281 | GCA_000317285_03931 | GCA_000317285_00281 | Unannotated protein. | Unannotated protein. | 0.655 |
PCC6912_14770 | GCA_000317285_02162 | GCA_000317285_03931 | GCA_000317285_02162 | Unannotated protein. | Unannotated protein. | 0.655 |
PCC6912_14770 | PCC6912_40680 | GCA_000317285_03931 | GCA_000317285_00277 | Unannotated protein. | Unannotated protein. | 0.655 |
PCC6912_14770 | PCC6912_40690 | GCA_000317285_03931 | GCA_000317285_00884 | Unannotated protein. | Unannotated protein. | 0.655 |
PCC6912_14770 | psbA1 | GCA_000317285_03931 | GCA_000317285_06231 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. | 0.655 |
PCC6912_14770 | psbA3 | GCA_000317285_03931 | GCA_000317285_00854 | Unannotated protein. | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | 0.655 |
PCC6912_14770 | psbA3-2 | GCA_000317285_03931 | GCA_000317285_00855 | Unannotated protein. | Unannotated protein; Belongs to the reaction center PufL/M/PsbA/D family. | 0.655 |
PCC6912_14770 | psbA3-3 | GCA_000317285_03931 | GCA_000317285_01365 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. | 0.655 |
PCC6912_14770 | psbA3-4 | GCA_000317285_03931 | GCA_000317285_03345 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. | 0.655 |
PCC6912_14770 | psbD1 | GCA_000317285_03931 | GCA_000317285_00861 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. | 0.891 |
PCC6912_40680 | PCC6912_14770 | GCA_000317285_00277 | GCA_000317285_03931 | Unannotated protein. | Unannotated protein. | 0.655 |
PCC6912_40680 | psbD1 | GCA_000317285_00277 | GCA_000317285_00861 | Unannotated protein. | Unannotated protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex. | 0.975 |
PCC6912_40690 | GCA_000317285_00281 | GCA_000317285_00884 | GCA_000317285_00281 | Unannotated protein. | Unannotated protein. | 0.975 |
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