PCC6912_52300 protein (Chlorogloeopsis fritschii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PCC6912_52300

Unannotated protein. (504 aa)

Predicted Functional Partners:

PCC6912_29000

0.943

PCC6912_26870

0.943

PCC6912_36940

0.943

PCC6912_49940

0.879

PCC6912_47500

0.821

PCC6912_32890

0.821

glgA

0.789

PCC6912_10580

0.747

glgA-2

0.742

PCC6912_52290

0.696

Your Current Organism:

Chlorogloeopsis fritschii

NCBI taxonomy Id: 211165
Other names: C. fritschii PCC 6912, Chlorogloeopsis fritschii PCC 6912, Chlorogloeopsis fritschii str. PCC 6912, Chlorogloeopsis sp. ATCC 27193, Chlorogloeopsis sp. DSM 101459, Chlorogloeopsis sp. PCC 6912

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PCC6912_10580	PCC6912_49940	GCA_000317285_03096	GCA_000317285_01909	Unannotated protein.	Unannotated protein.	0.751
PCC6912_10580	PCC6912_52300	GCA_000317285_03096	GCA_000317285_05471	Unannotated protein.	Unannotated protein.	0.747
PCC6912_10580	glgA	GCA_000317285_03096	GCA_000317285_00760	Unannotated protein.	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.632
PCC6912_10580	glgA-2	GCA_000317285_03096	GCA_000317285_04950	Unannotated protein.	Unannotated protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.632
PCC6912_26870	PCC6912_49940	GCA_000317285_04202	GCA_000317285_01909	Unannotated protein.	Unannotated protein.	0.943
PCC6912_26870	PCC6912_52300	GCA_000317285_04202	GCA_000317285_05471	Unannotated protein.	Unannotated protein.	0.943
PCC6912_29000	PCC6912_49940	GCA_000317285_02469	GCA_000317285_01909	Unannotated protein.	Unannotated protein.	0.943
PCC6912_29000	PCC6912_52300	GCA_000317285_02469	GCA_000317285_05471	Unannotated protein.	Unannotated protein.	0.943
PCC6912_32890	PCC6912_47500	GCA_000317285_06632	GCA_000317285_03710	Unannotated protein.	Unannotated protein.	0.874
PCC6912_32890	PCC6912_49940	GCA_000317285_06632	GCA_000317285_01909	Unannotated protein.	Unannotated protein.	0.918
PCC6912_32890	PCC6912_52290	GCA_000317285_06632	GCA_000317285_05472	Unannotated protein.	Unannotated protein.	0.404
PCC6912_32890	PCC6912_52300	GCA_000317285_06632	GCA_000317285_05471	Unannotated protein.	Unannotated protein.	0.821
PCC6912_36940	PCC6912_49940	GCA_000317285_06241	GCA_000317285_01909	Unannotated protein.	Unannotated protein.	0.943
PCC6912_36940	PCC6912_52300	GCA_000317285_06241	GCA_000317285_05471	Unannotated protein.	Unannotated protein.	0.943
PCC6912_47500	PCC6912_32890	GCA_000317285_03710	GCA_000317285_06632	Unannotated protein.	Unannotated protein.	0.874
PCC6912_47500	PCC6912_49940	GCA_000317285_03710	GCA_000317285_01909	Unannotated protein.	Unannotated protein.	0.914
PCC6912_47500	PCC6912_52290	GCA_000317285_03710	GCA_000317285_05472	Unannotated protein.	Unannotated protein.	0.404
PCC6912_47500	PCC6912_52300	GCA_000317285_03710	GCA_000317285_05471	Unannotated protein.	Unannotated protein.	0.821
PCC6912_49940	PCC6912_10580	GCA_000317285_01909	GCA_000317285_03096	Unannotated protein.	Unannotated protein.	0.751
PCC6912_49940	PCC6912_26870	GCA_000317285_01909	GCA_000317285_04202	Unannotated protein.	Unannotated protein.	0.943

page 1 of 3

Network Stats

number of nodes:

4

number of edges:

4

average node degree:

2

avg. local clustering coefficient:

0.833

expected number of edges:

3

PPI enrichment p-value:

0.351

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006744

Ubiquinone biosynthetic process

4 of 24

1.92

1.77

0.00024

GO:0002098

tRNA wobble uridine modification

2 of 10

2.0

0.79

0.0328

GO:0044550

Secondary metabolite biosynthetic process

2 of 11

1.96

0.77

0.0352

GO:0032259

Methylation

4 of 143

1.15

0.65

0.0241

GO:0044283

Small molecule biosynthetic process

5 of 255

0.99

0.62

0.0163

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0102208

2-polyprenyl-6-hydroxyphenol methylase activity

2 of 2

2.7

0.96

0.0179

GO:0031177

Phosphopantetheine binding

2 of 2

2.7

0.96

0.0179

GO:0008689

3-demethylubiquinone-9 3-O-methyltransferase activity

2 of 2

2.7

0.96

0.0179

GO:0008425

2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity

2 of 4

2.4

0.95

0.0179

GO:0008757

S-adenosylmethionine-dependent methyltransferase activity

3 of 64

1.37

0.78

0.0182

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

9 of 1403

0.51

0.34

0.0261

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:6053

Mixed, incl. Ubiquinone metabolic process, and Biotin metabolic process

7 of 45

1.89

3.58

1.66e-09

CL:6055

Mixed, incl. Ubiquinone metabolic process, and ubiE/COQ5 methyltransferase family

5 of 27

1.97

2.95

3.17e-07

CL:6049

Mixed, incl. Photosynthesis, and Ubiquinone metabolic process

8 of 117

1.53

2.61

3.44e-09

CL:6056

Ubiquinone metabolic process, and ubiE/COQ5 methyltransferase family

4 of 22

1.96

2.28

1.65e-05

CL:6061

Ubiquinone biosynthesis, and FAD binding domain

3 of 10

2.18

1.91

0.00020

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00130

Ubiquinone and other terpenoid-quinone biosynthesis

4 of 54

1.57

1.45

0.00043

map01053

Biosynthesis of siderophore group nonribosomal peptides

2 of 15

1.82

0.86

0.0216

map01110

Biosynthesis of secondary metabolites

6 of 563

0.73

0.46

0.0216

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0110142

Ubiquinone biosynthesis complex

4 of 10

2.3

2.83

2.94e-06

GOCC:0009366

Enterobactin synthetase complex

2 of 3

2.52

1.3

0.0041

GOCC:0032991

Protein-containing complex

8 of 774

0.71

0.54

0.0031

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0489

Methyltransferase

7 of 139

1.4

1.92

6.06e-07

KW-0831

Ubiquinone biosynthesis

2 of 7

2.15

1.02

0.0124

KW-0596

Phosphopantetheine

2 of 10

2.0

1.0

0.0124

KW-0949

S-adenosyl-L-methionine

3 of 52

1.46

0.87

0.0124

KW-0830

Ubiquinone

2 of 24

1.62

0.67

0.0481

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About