node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplM | rpsB | GCA_000317285_05830 | GCA_000317285_04392 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
rplM | rpsE | GCA_000317285_05830 | GCA_000317285_05820 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
rplM | rpsF | GCA_000317285_05830 | GCA_000317285_04385 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
rplM | rpsG | GCA_000317285_05830 | GCA_000317285_03258 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
rplM | rpsI | GCA_000317285_05830 | GCA_000317285_05831 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rplM | rpsJ | GCA_000317285_05830 | GCA_000317285_03255 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
rplM | rpsK | GCA_000317285_05830 | GCA_000317285_05826 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.998 |
rplM | rpsL | GCA_000317285_05830 | GCA_000317285_03259 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
rplM | rpsN | GCA_000317285_05830 | GCA_000317285_02765 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.997 |
rplM | rpsO | GCA_000317285_05830 | GCA_000317285_04295 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
rpsB | rplM | GCA_000317285_04392 | GCA_000317285_05830 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
rpsB | rpsE | GCA_000317285_04392 | GCA_000317285_05820 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsB | rpsF | GCA_000317285_04392 | GCA_000317285_04385 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rpsB | rpsG | GCA_000317285_04392 | GCA_000317285_03258 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsI | GCA_000317285_04392 | GCA_000317285_05831 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rpsB | rpsJ | GCA_000317285_04392 | GCA_000317285_03255 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsB | rpsK | GCA_000317285_04392 | GCA_000317285_05826 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpsB | rpsL | GCA_000317285_04392 | GCA_000317285_03259 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rpsB | rpsN | GCA_000317285_04392 | GCA_000317285_02765 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rpsB | rpsO | GCA_000317285_04392 | GCA_000317285_04295 | Unannotated protein; Belongs to the universal ribosomal protein uS2 family. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |