PCC6912_64480 protein (Chlorogloeopsis fritschii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PCC6912_64480

Unannotated protein. (311 aa)

Predicted Functional Partners:

phnC1

0.976

phnE

0.935

PCC6912_64470

0.808

phnD-2

0.764

phnD-3

0.752

PCC6912_13810

0.750

PCC6912_03110

0.750

PCC6912_63830

0.747

phnD

0.746

PCC6912_17940

0.739

Your Current Organism:

Chlorogloeopsis fritschii

NCBI taxonomy Id: 211165
Other names: C. fritschii PCC 6912, Chlorogloeopsis fritschii PCC 6912, Chlorogloeopsis fritschii str. PCC 6912, Chlorogloeopsis sp. ATCC 27193, Chlorogloeopsis sp. DSM 101459, Chlorogloeopsis sp. PCC 6912

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PCC6912_03110	PCC6912_13810	GCA_000317285_05222	GCA_000317285_04031	Unannotated protein.	Unannotated protein.	0.999
PCC6912_03110	PCC6912_17940	GCA_000317285_05222	GCA_000317285_00674	Unannotated protein.	Unannotated protein.	0.999
PCC6912_03110	PCC6912_63830	GCA_000317285_05222	GCA_000317285_01212	Unannotated protein.	Unannotated protein.	0.999
PCC6912_03110	PCC6912_64470	GCA_000317285_05222	GCA_000317285_05910	Unannotated protein.	Unannotated protein.	0.972
PCC6912_03110	PCC6912_64480	GCA_000317285_05222	GCA_000317285_05911	Unannotated protein.	Unannotated protein.	0.750
PCC6912_03110	phnD	GCA_000317285_05222	GCA_000317285_04231	Unannotated protein.	Unannotated protein.	0.750
PCC6912_03110	phnD-2	GCA_000317285_05222	GCA_000317285_04640	Unannotated protein.	Unannotated protein.	0.750
PCC6912_03110	phnD-3	GCA_000317285_05222	GCA_000317285_05288	Unannotated protein.	Unannotated protein.	0.750
PCC6912_13810	PCC6912_03110	GCA_000317285_04031	GCA_000317285_05222	Unannotated protein.	Unannotated protein.	0.999
PCC6912_13810	PCC6912_17940	GCA_000317285_04031	GCA_000317285_00674	Unannotated protein.	Unannotated protein.	0.999
PCC6912_13810	PCC6912_63830	GCA_000317285_04031	GCA_000317285_01212	Unannotated protein.	Unannotated protein.	0.999
PCC6912_13810	PCC6912_64470	GCA_000317285_04031	GCA_000317285_05910	Unannotated protein.	Unannotated protein.	0.975
PCC6912_13810	PCC6912_64480	GCA_000317285_04031	GCA_000317285_05911	Unannotated protein.	Unannotated protein.	0.750
PCC6912_13810	phnD	GCA_000317285_04031	GCA_000317285_04231	Unannotated protein.	Unannotated protein.	0.750
PCC6912_13810	phnD-2	GCA_000317285_04031	GCA_000317285_04640	Unannotated protein.	Unannotated protein.	0.750
PCC6912_13810	phnD-3	GCA_000317285_04031	GCA_000317285_05288	Unannotated protein.	Unannotated protein.	0.750
PCC6912_17940	PCC6912_03110	GCA_000317285_00674	GCA_000317285_05222	Unannotated protein.	Unannotated protein.	0.999
PCC6912_17940	PCC6912_13810	GCA_000317285_00674	GCA_000317285_04031	Unannotated protein.	Unannotated protein.	0.999
PCC6912_17940	PCC6912_63830	GCA_000317285_00674	GCA_000317285_01212	Unannotated protein.	Unannotated protein.	0.999
PCC6912_17940	PCC6912_64470	GCA_000317285_00674	GCA_000317285_05910	Unannotated protein.	Unannotated protein.	0.959

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.649

expected number of edges:

11

PPI enrichment p-value:

1.6e-10

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 116

1.35

2.24

2.26e-10

GO:0010467

Gene expression

11 of 203

1.15

1.66

2.26e-10

GO:0009059

Macromolecule biosynthetic process

11 of 227

1.1

1.54

2.26e-10

GO:0044271

Cellular nitrogen compound biosynthetic process

11 of 354

0.91

1.05

1.55e-08

GO:0044238

Primary metabolic process

11 of 1054

0.44

0.36

0.0010

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 57

1.66

3.72

1.68e-13

GO:0019843

rRNA binding

5 of 41

1.5

1.61

8.00e-05

GO:0003723

RNA binding

6 of 91

1.24

1.28

8.44e-05

GO:0003676

Nucleic acid binding

7 of 415

0.64

0.39

0.0358

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 60

1.64

3.71

5.03e-14

GO:0015935

Small ribosomal subunit

2 of 6

1.94

1.09

0.0077

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1083

Mixed, incl. Small ribosomal subunit, and Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like

6 of 10

2.19

4.53

1.70e-10

CL:1043

Structural constituent of ribosome

11 of 56

1.71

4.35

3.06e-16

CL:1044

Structural constituent of ribosome

8 of 44

1.68

3.38

3.99e-11

CL:1045

Structural constituent of ribosome

7 of 37

1.69

3.12

1.30e-09

CL:1132

rRNA-binding

3 of 11

1.85

1.62

0.00045

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

10 of 60

1.64

3.71

4.67e-14

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

9 of 48

1.69

3.62

3.59e-12

GOCC:0015935

Small ribosomal subunit

4 of 12

1.94

2.36

9.51e-06

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 10

1.89

1.68

0.00036

GOCC:0043229

Intracellular organelle

10 of 311

0.92

1.04

1.79e-07

GOCC:0005622

Intracellular

11 of 1193

0.38

0.32

0.0018

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 58

1.65

3.76

6.24e-14

KW-0699

rRNA-binding

5 of 38

1.54

1.82

1.79e-05

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About