Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA29192.1Putative lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (672 aa)    
Predicted Functional Partners:
AIA29539.1
Putative metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.695
AIA29354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.625
AIA29581.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.619
AIA29351.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.553
serS
seryl-tRNA synthetase; Catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
AIA29549.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.517
lppD-2
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.493
AIA29356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.491
lppD-1
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.484
AIA29350.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.474
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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