rbfA protein (Mycoplasma californicum) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

rbfA

Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)

Predicted Functional Partners:

infB

0.934

rpsO

0.926

rpsE

0.922

truB

0.921

rpsD

0.919

rpsQ

0.919

rpsG

0.901

rpsK

0.898

rpsF

0.896

rpsI

0.896

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
infB	rbfA	MCFN_03310	MCFN_00105	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
infB	rpsD	MCFN_03310	MCFN_01280	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
infB	rpsE	MCFN_03310	MCFN_02335	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
infB	rpsF	MCFN_03310	MCFN_02040	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6.	0.939
infB	rpsG	MCFN_03310	MCFN_00495	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.943
infB	rpsI	MCFN_03310	MCFN_02895	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.930
infB	rpsK	MCFN_03310	MCFN_01690	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.947
infB	rpsO	MCFN_03310	MCFN_01345	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
infB	rpsQ	MCFN_03310	MCFN_02375	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
infB	truB	MCFN_03310	MCFN_01330	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine synthase B.	0.992
rbfA	infB	MCFN_00105	MCFN_03310	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
rbfA	rpsD	MCFN_00105	MCFN_01280	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
rbfA	rpsE	MCFN_00105	MCFN_02335	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
rbfA	rpsF	MCFN_00105	MCFN_02040	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6.	0.896
rbfA	rpsG	MCFN_00105	MCFN_00495	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.901
rbfA	rpsI	MCFN_00105	MCFN_02895	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.896
rbfA	rpsK	MCFN_00105	MCFN_01690	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.898
rbfA	rpsO	MCFN_00105	MCFN_01345	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
rbfA	rpsQ	MCFN_00105	MCFN_02375	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
rbfA	truB	MCFN_00105	MCFN_01330	Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine synthase B.	0.921