AIA29217.1 protein (Mycoplasma californicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AIA29217.1

GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)

Predicted Functional Partners:

AIA29219.1

0.908

engA

0.872

rplJ

0.864

engB

0.852

rplR

0.836

rplC

0.835

truB

0.825

rplA

0.825

rplV

0.824

rplW

0.824

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29217.1	AIA29219.1	MCFN_00190	MCFN_00200	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AIA29217.1	engA	MCFN_00190	MCFN_03075	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AIA29217.1	engB	MCFN_00190	MCFN_01600	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome biogenesis GTP-binding protein YsxC (EngB); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
AIA29217.1	rplA	MCFN_00190	MCFN_03160	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
AIA29217.1	rplC	MCFN_00190	MCFN_02420	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AIA29217.1	rplJ	MCFN_00190	MCFN_00465	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AIA29217.1	rplR	MCFN_00190	MCFN_02340	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
AIA29217.1	rplV	MCFN_00190	MCFN_02395	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AIA29217.1	rplW	MCFN_00190	MCFN_02410	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AIA29217.1	truB	MCFN_00190	MCFN_01330	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA pseudouridine synthase B.	0.825
AIA29219.1	AIA29217.1	MCFN_00200	MCFN_00190	rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AIA29219.1	engB	MCFN_00200	MCFN_01600	rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome biogenesis GTP-binding protein YsxC (EngB); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AIA29219.1	rplC	MCFN_00200	MCFN_02420	rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AIA29219.1	rplV	MCFN_00200	MCFN_02395	rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
engA	AIA29217.1	MCFN_03075	MCFN_00190	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
engA	engB	MCFN_03075	MCFN_01600	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome biogenesis GTP-binding protein YsxC (EngB); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
engA	rplA	MCFN_03075	MCFN_03160	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
engA	rplC	MCFN_03075	MCFN_02420	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
engA	rplR	MCFN_03075	MCFN_02340	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
engA	rplV	MCFN_03075	MCFN_02395	GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852