STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmH50S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)    
Predicted Functional Partners:
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.858
ksgA
16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.553
gtsB
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
rsmI
Ribosomal RNA small subunit methyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.520
gtsC
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.519
rluD
Ribosomal large subunit pseudouridine synthase D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.519
gtsA
Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.517
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.512
AIA29222.1
Lipoprotein, acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.496
mraW
16S rRNA methyltransferase; Catalyzes the methylation of the N4 position of C1402 on the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.471
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.