gtsA protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gtsA

Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)

Predicted Functional Partners:

gtsB

0.989

gtsC

0.980

AIA29583.1

0.925

AIA29584.1

0.828

AIA29585.1

0.680

AIA29758.1

0.676

cbiO2

0.572

cbiO1

0.571

gidA

0.548

lppB

0.532

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29583.1	AIA29584.1	MCFN_02230	MCFN_02235	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIA29583.1	AIA29585.1	MCFN_02230	MCFN_02240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AIA29583.1	cbiO1	MCFN_02230	MCFN_01470	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AIA29583.1	cbiO2	MCFN_02230	MCFN_01475	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AIA29583.1	gtsA	MCFN_02230	MCFN_00230	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AIA29583.1	gtsB	MCFN_02230	MCFN_00235	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AIA29583.1	gtsC	MCFN_02230	MCFN_00240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AIA29584.1	AIA29583.1	MCFN_02235	MCFN_02230	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIA29584.1	AIA29585.1	MCFN_02235	MCFN_02240	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIA29584.1	gtsA	MCFN_02235	MCFN_00230	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AIA29584.1	gtsC	MCFN_02235	MCFN_00240	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AIA29585.1	AIA29583.1	MCFN_02240	MCFN_02230	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AIA29585.1	AIA29584.1	MCFN_02240	MCFN_02235	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIA29585.1	gtsA	MCFN_02240	MCFN_00230	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
AIA29585.1	gtsB	MCFN_02240	MCFN_00235	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AIA29758.1	gtsA	MCFN_03240	MCFN_00230	Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AIA29758.1	gtsB	MCFN_03240	MCFN_00235	Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
AIA29758.1	gtsC	MCFN_03240	MCFN_00240	Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
cbiO1	AIA29583.1	MCFN_01470	MCFN_02230	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
cbiO1	cbiO2	MCFN_01470	MCFN_01475	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970