gtsB protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gtsB

Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)

Predicted Functional Partners:

gtsC

0.997

gtsA

0.996

AIA29585.1

0.929

potA

0.908

AIA29583.1

0.895

AIA29399.1

0.807

AIA29758.1

0.764

AIA29549.1

0.735

AIA29752.1

0.683

potC

0.640

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29399.1	AIA29549.1	MCFN_01255	MCFN_02055	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
AIA29399.1	AIA29585.1	MCFN_01255	MCFN_02240	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
AIA29399.1	AIA29752.1	MCFN_01255	MCFN_03200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein.	0.558
AIA29399.1	AIA29758.1	MCFN_01255	MCFN_03240	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
AIA29399.1	gtsA	MCFN_01255	MCFN_00230	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AIA29399.1	gtsB	MCFN_01255	MCFN_00235	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AIA29399.1	gtsC	MCFN_01255	MCFN_00240	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AIA29549.1	AIA29399.1	MCFN_02055	MCFN_01255	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
AIA29549.1	gtsA	MCFN_02055	MCFN_00230	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AIA29549.1	gtsB	MCFN_02055	MCFN_00235	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AIA29549.1	gtsC	MCFN_02055	MCFN_00240	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AIA29549.1	potA	MCFN_02055	MCFN_00610	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AIA29549.1	potC	MCFN_02055	MCFN_00618	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease protein.	0.630
AIA29583.1	AIA29585.1	MCFN_02230	MCFN_02240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIA29583.1	gtsA	MCFN_02230	MCFN_00230	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AIA29583.1	gtsB	MCFN_02230	MCFN_00235	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
AIA29583.1	gtsC	MCFN_02230	MCFN_00240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AIA29583.1	potA	MCFN_02230	MCFN_00610	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AIA29583.1	potC	MCFN_02230	MCFN_00618	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease protein.	0.606
AIA29585.1	AIA29399.1	MCFN_02240	MCFN_01255	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633