Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gtsBGlycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
gtsA
Glycerol ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.989
gtsC
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
potA
Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.781
AIA29583.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.776
AIA29585.1
ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.762
AIA29758.1
Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.761
AIA29752.1
Hypothetical protein.
  
     0.683
AIA29473.1
Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
AIA29399.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.560
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.536
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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