trmD protein (Mycoplasma californicum) - STRING interaction network

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[Homology]

Score

trmD

tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)

Predicted Functional Partners:

rpsP

0.984

rplS

0.982

rplB

0.908

rpsF

0.907

rpsD

0.906

rpsB

0.906

rplC

0.906

fusA

0.905

tsf

0.904

nusA

0.898

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fusA	nusA	MCFN_00500	MCFN_03300	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.896
fusA	rplB	MCFN_00500	MCFN_02405	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.989
fusA	rplC	MCFN_00500	MCFN_02420	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
fusA	rplS	MCFN_00500	MCFN_00275	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
fusA	rpsB	MCFN_00500	MCFN_01550	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
fusA	rpsD	MCFN_00500	MCFN_01280	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
fusA	rpsF	MCFN_00500	MCFN_02040	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S6.	0.988
fusA	rpsP	MCFN_00500	MCFN_00265	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
fusA	trmD	MCFN_00500	MCFN_00270	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
fusA	tsf	MCFN_00500	MCFN_01555	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
nusA	fusA	MCFN_03300	MCFN_00500	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.896
nusA	rplB	MCFN_03300	MCFN_02405	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.851
nusA	rplC	MCFN_03300	MCFN_02420	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
nusA	rplS	MCFN_03300	MCFN_00275	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
nusA	rpsB	MCFN_03300	MCFN_01550	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
nusA	rpsD	MCFN_03300	MCFN_01280	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
nusA	rpsF	MCFN_03300	MCFN_02040	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S6.	0.789
nusA	rpsP	MCFN_03300	MCFN_00265	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
nusA	trmD	MCFN_03300	MCFN_00270	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
nusA	tsf	MCFN_03300	MCFN_01555	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752