trmD protein (Mycoplasma californicum) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

trmD

tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)

Predicted Functional Partners:

rpsP

0.977

rplS

0.977

rpsB

0.872

tsf

0.867

fusA

0.861

rpsF

0.861

nusA

0.857

rpsD

0.855

rpsR

0.854

rplC

0.849

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fusA	nusA	MCFN_00500	MCFN_03300	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.851
fusA	rplC	MCFN_00500	MCFN_02420	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
fusA	rplS	MCFN_00500	MCFN_00275	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
fusA	rpsB	MCFN_00500	MCFN_01550	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
fusA	rpsD	MCFN_00500	MCFN_01280	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
fusA	rpsF	MCFN_00500	MCFN_02040	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S6.	0.998
fusA	rpsP	MCFN_00500	MCFN_00265	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
fusA	rpsR	MCFN_00500	MCFN_02050	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
fusA	trmD	MCFN_00500	MCFN_00270	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
fusA	tsf	MCFN_00500	MCFN_01555	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
nusA	fusA	MCFN_03300	MCFN_00500	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.851
nusA	rplC	MCFN_03300	MCFN_02420	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
nusA	rplS	MCFN_03300	MCFN_00275	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
nusA	rpsB	MCFN_03300	MCFN_01550	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
nusA	rpsD	MCFN_03300	MCFN_01280	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
nusA	rpsF	MCFN_03300	MCFN_02040	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S6.	0.868
nusA	rpsP	MCFN_03300	MCFN_00265	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
nusA	rpsR	MCFN_03300	MCFN_02050	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
nusA	trmD	MCFN_03300	MCFN_00270	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	tRNA (guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
nusA	tsf	MCFN_03300	MCFN_01555	Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744