pepA-1 protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

pepA-1

Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)

Predicted Functional Partners:

pepA-2

0.906

dgk-2

0.561

dgk-1

0.561

AIA29242.1

0.526

AIA29243.1

0.424

pepP

0.422

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29242.1	AIA29243.1	MCFN_00315	MCFN_00320	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.527
AIA29242.1	dgk-2	MCFN_00315	MCFN_02775	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AIA29242.1	pepA-1	MCFN_00315	MCFN_00310	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AIA29243.1	AIA29242.1	MCFN_00320	MCFN_00315	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AIA29243.1	pepA-1	MCFN_00320	MCFN_00310	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
dgk-1	dgk-2	MCFN_02780	MCFN_02775	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
dgk-1	pepA-1	MCFN_02780	MCFN_00310	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
dgk-1	pepA-2	MCFN_02780	MCFN_01095	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
dgk-2	AIA29242.1	MCFN_02775	MCFN_00315	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
dgk-2	dgk-1	MCFN_02775	MCFN_02780	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
dgk-2	pepA-1	MCFN_02775	MCFN_00310	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
dgk-2	pepA-2	MCFN_02775	MCFN_01095	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
pepA-1	AIA29242.1	MCFN_00310	MCFN_00315	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
pepA-1	AIA29243.1	MCFN_00310	MCFN_00320	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.424
pepA-1	dgk-1	MCFN_00310	MCFN_02780	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
pepA-1	dgk-2	MCFN_00310	MCFN_02775	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
pepA-1	pepA-2	MCFN_00310	MCFN_01095	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
pepA-1	pepP	MCFN_00310	MCFN_03030	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
pepA-2	dgk-1	MCFN_01095	MCFN_02780	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
pepA-2	dgk-2	MCFN_01095	MCFN_02775	Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561