Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA29254.1dephospho-CoA kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)    
Predicted Functional Partners:
coaD
Phosphopantetheine adenylyltransferase; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.939
acpS
Holo-[acyl-carrier-protein] synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.916
AIA29253.1
DnaB-related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.855
AIA29255.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
AIA29303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.750
dnaI
Putative primosomal protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.742
AIA29759.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.739
AIA29328.1
ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
secDF
Bifunctional preprotein translocase subunit SecD/SecF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.660
lspA
Lipoprotein signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.655
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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