Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29268.1Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (661 aa)    
Predicted Functional Partners:
AIA29581.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.776
AIA29507.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.769
AIA29496.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.741
AIA29505.1
Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.631
AIA29539.1
Putative metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.576
potD
Spermidine/putrescine ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.553
rplL
50S ribosomal protein L7/L12; Present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
oppB-3
Putative oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.525
AIA29237.1
Membrane protein P80; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.501
AIA29484.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.454
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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