AIA29274.1 protein (Mycoplasma californicum)

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[Homology]

Score

AIA29274.1

Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (348 aa)

Predicted Functional Partners:

AIA29473.1

0.578

AIA29360.1

0.481

rplS

0.446

rplW

0.427

rplD

0.427

rpsL

0.425

rpsC

0.422

rplC

0.421

rpmF

0.420

rpsE

0.420

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29274.1	AIA29360.1	MCFN_00505	MCFN_01010	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AIA29274.1	AIA29473.1	MCFN_00505	MCFN_01645	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AIA29274.1	rplC	MCFN_00505	MCFN_02420	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AIA29274.1	rplD	MCFN_00505	MCFN_02415	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AIA29274.1	rplS	MCFN_00505	MCFN_00275	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AIA29274.1	rplW	MCFN_00505	MCFN_02410	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AIA29274.1	rpmF	MCFN_00505	MCFN_01220	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AIA29274.1	rpsC	MCFN_00505	MCFN_02390	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S3.	0.422
AIA29274.1	rpsE	MCFN_00505	MCFN_02335	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AIA29274.1	rpsL	MCFN_00505	MCFN_00490	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.425
AIA29360.1	AIA29274.1	MCFN_01010	MCFN_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.481
AIA29473.1	AIA29274.1	MCFN_01645	MCFN_00505	Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.578
rplC	AIA29274.1	MCFN_02420	MCFN_00505	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.421
rplC	rplD	MCFN_02420	MCFN_02415	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplC	rplS	MCFN_02420	MCFN_00275	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
rplC	rplW	MCFN_02420	MCFN_02410	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplC	rpmF	MCFN_02420	MCFN_01220	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
rplC	rpsC	MCFN_02420	MCFN_02390	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3.	0.997
rplC	rpsE	MCFN_02420	MCFN_02335	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
rplC	rpsL	MCFN_02420	MCFN_00490	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.989

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