STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nusBAntitermination protein NusB; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
rpsJ
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.878
nusA
Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.878
fmt
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.817
nusG
Antitermination protein NusG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.816
AIA29303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.809
rpoB
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.794
rpoA
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.785
folD
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.609
potD
Spermidine/putrescine ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.599
truB
tRNA pseudouridine synthase B.
  
  
 0.578
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.