STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdMType I restriction-modification system M subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)    
Predicted Functional Partners:
hsdR
Type I restriction modification system endonuclease subunit HsdR.
 
 
 0.999
hsdS-3
Type I restriction modification system specificity subunit HsdS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.980
hsdS-2
Type I restriction modification system specificity subunit HsdS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
hsdS-1
Type I restriction modification system specificity subunit HsdS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.969
uvrB
The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.777
AIA29320.1
AAA domain protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.587
atpF
ATP synthase F0 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.577
AIA29317.1
Integrase-recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.556
uvrC
Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.506
uvrA
Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.466
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.