mscL protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mscL

Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)

Predicted Functional Partners:

metK

0.627

AIA29775.1

0.522

ktrB

0.519

AIA29324.1

0.515

ktrA

0.511

rplU

0.430

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29324.1	mscL	MCFN_00830	MCFN_00825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AIA29324.1	rplU	MCFN_00830	MCFN_00835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
AIA29775.1	metK	MCFN_03340	MCFN_01225	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AIA29775.1	mscL	MCFN_03340	MCFN_00825	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
ktrA	ktrB	MCFN_01935	MCFN_01930	Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter KtrB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ktrA	metK	MCFN_01935	MCFN_01225	Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
ktrA	mscL	MCFN_01935	MCFN_00825	Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ktrB	ktrA	MCFN_01930	MCFN_01935	Potassium transporter KtrB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ktrB	mscL	MCFN_01930	MCFN_00825	Potassium transporter KtrB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
metK	AIA29775.1	MCFN_01225	MCFN_03340	S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
metK	ktrA	MCFN_01225	MCFN_01935	S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
metK	mscL	MCFN_01225	MCFN_00825	S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
mscL	AIA29324.1	MCFN_00825	MCFN_00830	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.515
mscL	AIA29775.1	MCFN_00825	MCFN_03340	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
mscL	ktrA	MCFN_00825	MCFN_01935	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
mscL	ktrB	MCFN_00825	MCFN_01930	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter KtrB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
mscL	metK	MCFN_00825	MCFN_01225	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	S-adenosylmethionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
mscL	rplU	MCFN_00825	MCFN_00835	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
rplU	AIA29324.1	MCFN_00835	MCFN_00830	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.490
rplU	mscL	MCFN_00835	MCFN_00825	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430