smc protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

smc

Chromosome segregation ATPase SMC; Derived by automated computational analysis using gene prediction method: Protein Homology. (994 aa)

Predicted Functional Partners:

scpA

0.951

scpB

0.840

ftsY

0.664

topA

0.591

AIA29775.1

0.528

parE

0.482

gyrB

0.482

ffh

0.460

potA

0.455

AIA29360.1

0.440

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29360.1	smc	MCFN_01010	MCFN_00855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome segregation ATPase SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AIA29775.1	ffh	MCFN_03340	MCFN_02170	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
AIA29775.1	ftsY	MCFN_03340	MCFN_02985	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AIA29775.1	gyrB	MCFN_03340	MCFN_03395	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA gyrase subunit B; Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AIA29775.1	parE	MCFN_03340	MCFN_00095	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AIA29775.1	potA	MCFN_03340	MCFN_00610	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIA29775.1	smc	MCFN_03340	MCFN_00855	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome segregation ATPase SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AIA29775.1	topA	MCFN_03340	MCFN_02030	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
ffh	AIA29775.1	MCFN_02170	MCFN_03340	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
ffh	ftsY	MCFN_02170	MCFN_02985	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ffh	smc	MCFN_02170	MCFN_00855	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome segregation ATPase SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
ffh	topA	MCFN_02170	MCFN_02030	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
ftsY	AIA29775.1	MCFN_02985	MCFN_03340	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
ftsY	ffh	MCFN_02985	MCFN_02170	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ftsY	smc	MCFN_02985	MCFN_00855	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome segregation ATPase SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
ftsY	topA	MCFN_02985	MCFN_02030	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
gyrB	AIA29775.1	MCFN_03395	MCFN_03340	DNA gyrase subunit B; Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
gyrB	smc	MCFN_03395	MCFN_00855	DNA gyrase subunit B; Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome segregation ATPase SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
gyrB	topA	MCFN_03395	MCFN_02030	DNA gyrase subunit B; Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
parE	AIA29775.1	MCFN_00095	MCFN_03340	Negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650