STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29336.1DHH family phosphoesterase. (652 aa)    
Predicted Functional Partners:
rplI
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.851
AIA29339.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.844
dnaB
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.836
uvrA
Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
uvrB
The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
recD
RecD/TraA family helicase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.567
AIA29491.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
prfA
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.450
AIA29333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
AIA29495.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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