STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaBDNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)    
Predicted Functional Partners:
dnaG
DNA primase; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
dnaI
Putative primosomal protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.998
dnaA
Chromosomal replication initiation protein DnaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.944
AIA29775.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.888
rplI
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.878
AIA29336.1
DHH family phosphoesterase.
  
  
 0.844
AIA29339.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.830
pcrA
ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.828
dnaH
DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.822
dnaX
DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.793
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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