STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29350.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)    
Predicted Functional Partners:
lppD-1
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.919
AIA29354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.876
AIA29356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.876
lppD-2
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.865
atpA-2
ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.812
atpD-2
ATP synthase F0F1 subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.752
AIA29243.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
   0.741
AIA29427.1
Putative lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.709
AIA29651.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.693
AIA29360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.664
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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