STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N7)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B.
  
 
 0.735
metS
methionyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.569
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.480
efp
Elongation factor P; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.473
topA
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.466
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.454
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.444
infB
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.438
tilS
tRNA(Ile)-lysidine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.437
lysS
lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.435
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.