Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ldhL-lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase E1 component subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.985
pyk
Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.979
pdhA
Pyruvate dehydrogenase E1 component subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.926
pgiB-2
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.902
AIA29371.1
Phosphoketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.897
pgiB-1
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.878
tkt
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.870
fba
Fructose-bisphosphate aldolase; Catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.856
lon
ATP-dependent protease La; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.849
acpP
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.831
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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