STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lplA-2Lipoate--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
AIA29379.1
Glycine cleavage system protein H; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.985
lplA-1
Lipoate-protein ligase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.925
AIA29378.1
Luciferase family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
AIA29380.1
SIR2 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.821
AIA29382.1
NADH-dependent flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
pdhC
Dihydrolipoamide acetyltransferase; Unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.708
AIA29212.1
Lipoyl domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.692
mraW
16S rRNA methyltransferase; Catalyzes the methylation of the N4 position of C1402 on the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.413
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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